# Molecular vibrations

Molecular vibrations are one of three different kinds of motion for molecules that include translational motion (when the whole molecule goes in the same direction) and rotational motion (when the molecule spins like a top)

A vibrational motion for a molecule is when the bonds between atoms within a molecule move. Think of the atoms as round balls that are attached by a spring that can stretch back and forth. An example of this motion is "stretching", the simplest example of a vibration for a molecule and occurs between just two atoms. Some examples of molecules that are like this include hydrogen H2, nitrogen N2 and oxygen O2

## Types of vibrations

If the molecule has more than two atoms, then things get more complicated. Suppose just one more atom is added so now there are three atoms like in water H2O where the two hydrogen atoms are both attached to the central oxygen atom. Remember with hydrogen there was one kind of stretching, but in water there are two kinds of stretching and four other kinds of vibration called bending vibrations as shown below.

The atoms in a CH2 group or molecules like water can vibrate in six different ways: symmetric and antisymmetric stretching, scissoring, rocking, wagging and twisting:

Symmetrical
stretching
Antisymmetrical
stretching
Scissoring

Rocking Wagging Twisting

symmetric stretching: when the two attached atoms move away and toward the central atom at the same time.

antisymmetric stretching: When the two attached atoms do not move away and toward the central atom at the same time.

scissoring: Just like the name says scissoring is when the two atoms move away and toward each other

rocking: This motion is like a pendulum on a clock going back and forth only here an atom is the pendulum and there are two instead of one.

wagging: If a person holds up their hand in front of them and puts there two fingers in a "V" sign and bend there wrist toward and away from them. Here the tips of the fingers are the attached atoms and the wrist is the central atom.

twisting: This motion is like a person is walking on a treadmill where their waist is the central atom and their feet are the two attached atoms[1]

### Molecules with more than three atoms

Molecules with more than three atoms are even more complicated and have even more vibrations which are sometimes called "vibrational modes". Each new vibrational mode is basically a different combination of the six shown above. The more atoms in the molecule the more ways they can be combined. For most molecules with N atoms the number of possible vibrations for that molecule is 3N - 6 while linear molecules, or molecules with there atoms in a straight line, have 3N-5 vibrational modes.[2]

## Relation of Energy and Vibration

### Newtonian mechanics

Using Newtonian mechanics the vibrations of a molecule can be calculated by treating the bonds like springs. This is useful because like a spring, a bond requires energy to stretch it out and it also takes energy to squeeze it together. The energy needed to stretch or squeeze the bond is dependent on the stiffness of the bond, which is represented by the spring constant k, and the reduced mass, or "center of mass" of the two atoms attached to either end denoted by μ. The formula used to relate the energy needed to cause a vibration in the bond is:

${\displaystyle \ E=h\nu ={h \over {2\pi }}{\sqrt {k \over \mu }}.\!}$

h: is planck's constant

ν: is frequency and represents the rate at which the bond is squished together and pulled apart again. The larger ν the faster this rate becomes.

Ε: is the energy required to push and pull the bond together.

μ: The reduce mass is the two masses of the atoms multiplied together and divided by their addition:

${\displaystyle \mu ={m_{1}m_{2} \over m_{1}+m_{2}}.\!}$ [3]

### Quantum mechanics

Using quantum mechanics, the formula that describes the spring is exactly the same as the Newtonian mechanics version except only certain energies or energy levels are allowed. Think of the energy levels as steps on a ladder where a person can only go up or down one rung at a time. Just as that person can't stand on the space between rungs so the bond can not have an energy between energy levels. This new formula becomes:

${\displaystyle E_{n}=h\nu =h\left(n+{1 \over 2}\right){1 \over {2\pi }}{\sqrt {k \over m}}\!}$ ,

where n is a quantum number or "energy level" that can take values of 0, 1, 2 ... The statement that energy levels can only go up or down one level at a time is known as a selection rule which states that the only allowed transitions between energy levels are:

${\displaystyle \Delta n=\pm 1}$

where \Delta n is the energy transition.[4]

## Applications of vibrational motions

When light of a certain frequency hits a molecule that has a vibration whose motion corresponds to the same frequency then the light gets absorbed into the molecule and the energy from the light causes the bonds to move in that specific vibrational motion. By checking for light that gets absorbed, scientists can tell if a certain kind of molecular bond is there and match it against a list of molecules that have that bond.

However, some molecules like helium and argon have only one atom and don't have any bonds. This means that they won't absorb any light in the same way a molecule with more than one atom can.

The specific fields of chemistry that use molecular vibrations in their studies include infrared spectroscopy (IR) and Raman spectroscopy (Raman) with IR being more widely used and having three subfields of its own. These subfields are known as Near IR, Mid IR and Far IR spectroscopy. The following is a general list of these fields and real world applications

Near IR: quantitative determination of species such as proteins, fats, low low-molecular-weight hydrocarbons and water. Further use is obtained in the agricultural products, food, petroleum and chemical industries

Mid IR:The most popular of the IR fields, is used in determining structure of organic and biochemical compounds.

Far IR: this field is less popular though it has found uses in inorganic studies [5]

Raman: Is used for the qualitative and quantitative study of inorganic, organic and biological systems often as a complimentary technique to IR.[6]

## References

1. Skoog, D. A.; Holler, F. J.; Crouch, S. R. Principles of Instrumental Analysis, 6th ed.; Thomson Brooks/Cole: Belmont, CA, 2007. pg.433.
2. Skoog, D. A.; Holler, F. J.; Crouch, S. R. Principles of Instrumental Analysis, 6th ed.; Thomson Brooks/Cole: Belmont, CA, 2007. pg.437.
3. Skoog, D. A.; Holler, F. J.; Crouch, S. R. Principles of Instrumental Analysis, 6th ed.; Thomson Brooks/Cole: Belmont, CA, 2007. pg.434.
4. McQuarrie, D. A.; Simon, J. D.; Physical Chemistry A Molecular Approach,Anne McGuire, University Science Books, 1997. pg.166-167.
5. Skoog, D. A.; Holler, F. J.; Crouch, S. R. Principles of Instrumental Analysis, 6th ed.; Thomson Brooks/Cole: Belmont, CA, 2007. pg.430-495.
6. Grasselli, J. G.; Bulkins, B. J.; Analytical Raman Spectroscopy, eds. New York: Wiley, 1991.